scikit-allel
v1.3.3
Data structures
Statistics and plotting
Diversity & divergence
F-statistics
Hardy-Weinberg equilibrium
Linkage disequilibrium
Site frequency spectra
Pairwise distance and ordination
Principal components analysis
Admixture
Selection
Mendelian inheritance
Runs of homozygosity (ROH)
Window utilities
Preprocessing utilities
Miscellanea
Input/output utilities
Chunked storage utilities
Miscellaneous utilities
Release notes
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Statistics and plotting
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Statistics and plotting
¶
Diversity & divergence
F-statistics
Hardy-Weinberg equilibrium
Linkage disequilibrium
Site frequency spectra
Pairwise distance and ordination
Principal components analysis
Admixture
Selection
Integrated haplotype score (IHS)
Cross-population extended haplotype homozygosity (XPEHH)
Number of segregating sites by length (NSL)
Haplotype diversity, Garud’s H statistics
Population branching statistic (PBS)
Delta Tajima’s D
Utilities and plotting functions
Mendelian inheritance
Runs of homozygosity (ROH)
Window utilities
Preprocessing utilities
Miscellanea
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v: v1.3.3
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