Input/output utilities¶
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allel.io.
write_vcf
(path, variants, rename=None, number=None, description=None, fill=None, write_header=True)[source]¶
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allel.io.
write_fasta
(path, sequences, names, mode='w', width=80)[source]¶ Write nucleotide sequences stored as numpy arrays to a FASTA file.
Parameters: path : string
File path.
sequences : sequence of arrays
One or more ndarrays of dtype ‘S1’ containing the sequences.
names : sequence of strings
Names of the sequences.
mode : string, optional
Use ‘a’ to append to an existing file.
width : int, optional
Maximum line width.