scikit-allel
Data structures
GenotypeArray
HaplotypeArray
AlleleCountsArray
VariantTable
FeatureTable
SortedIndex
UniqueIndex
SortedMultiIndex
Utility functions
Compressed arrays (bcolz)
GenotypeCArray
HaplotypeCArray
AlleleCountsCArray
VariantCTable
FeatureCTable
Utility functions
Statistics
Diversity & divergence
Pairwise distance
Hardy-Weinberg equilibrium
Linkage disequilibrium
Window utilities
Plotting functions
Variant location
Pairwise distance
Linkage disequilibrium
scikit-allel
Docs
»
Statistics
Edit on GitHub
Statistics
ΒΆ
Statistical functions for use with variant call data.
Diversity & divergence
Nucleotide diversity & divergence
F-statistics
Fixed differences
Pairwise distance
Hardy-Weinberg equilibrium
Linkage disequilibrium
Window utilities
Read the Docs
v: v0.10.0
Versions
latest
stable
v0.10.0
v0.10
v0.9.2
v0.9.1
v0.9.0
v0.9
v0.8.0
v0.8
v0.7.0
v0.6.0
v0.5.0
v0.4.0
v0.3.0
Downloads
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.